Salzberg S L

Top coauthors of Salzberg S L

White O (19 papers)

Fraser C M (12 papers)

Eisen J A (11 papers)

Venter J C (9 papers)

Peterson J (7 papers)

List of Salzberg S L publications


Salzberg S L 2012. "The perils of gene patents." Clinical pharmacology and therapeutics 91 (6) doi:10.1038/clpt.2012.6


Shakirov E V, Salzberg S L, Alam M, Shippen D E 2008. "Analysis of Carica papaya Telomeres and Telomere-Associated Proteins: Insights into the Evolution of Telomere Maintenance in Brassicales." Tropical plant biology 1 (3-4) doi:10.1007/s12042-008-9018-x


Carninci P, Kasukawa T, Katayama S, Gough J, Frith M C, et al. 2005. "The transcriptional landscape of the mammalian genome." Science (New York, N.Y.) 309 (5740) doi:10.1126/science.1112014
Majoros W H, Pertea M, Salzberg S L 2005. "Efficient implementation of a generalized pair hidden Markov model for comparative gene finding." Bioinformatics (Oxford, England) 21 (9) doi:10.1093/bioinformatics/bti297


Majoros W H, Pertea M, Salzberg S L 2004. "TigrScan and GlimmerHMM: two open source ab initio eukaryotic gene-finders." Bioinformatics (Oxford, England) 20 (16) doi:10.1093/bioinformatics/bth315


Read T D, Myers G S A, Brunham R C, Nelson W C, Paulsen I T, et al. 2003. "Genome sequence of Chlamydophila caviae (Chlamydia psittaci GPIC): examining the role of niche-specific genes in the evolution of the Chlamydiaceae." Nucleic acids research 31 (8) doi:


Fleischmann R D, Alland D, Eisen J A, Carpenter L, White O, et al. 2002. "Whole-genome comparison of Mycobacterium tuberculosis clinical and laboratory strains." Journal of bacteriology 184 (19) doi:


Suzek B E, Ermolaeva M D, Schreiber M, Salzberg S L 2001. "A probabilistic method for identifying start codons in bacterial genomes." Bioinformatics (Oxford, England) 17 (12) doi:
Kennedy S P, Ng W V, Salzberg S L, Hood L, DasSarma S 2001. "Understanding the adaptation of Halobacterium species NRC-1 to its extreme environment through computational analysis of its genome sequence." Genome research 11 (10) doi:10.1101/gr.190201
Tettelin H, Nelson K E, Paulsen I T, Eisen J A, Read T D, et al. 2001. "Complete genome sequence of a virulent isolate of Streptococcus pneumoniae." Science (New York, N.Y.) 293 (5529) doi:10.1126/science.1061217
Salzberg S L, White O, Peterson J, Eisen J A 2001. "Microbial genes in the human genome: lateral transfer or gene loss?" Science (New York, N.Y.) 292 (5523) doi:10.1126/science.1061036
Bevan M, Mayer K, White O, Eisen J A, Preuss D, et al. 2001. "Sequence and analysis of the Arabidopsis genome." Current opinion in plant biology 4 (2) doi:
Nierman W C, Feldblyum T V, Laub M T, Paulsen I T, Nelson K E, et al. 2001. "Complete genome sequence of Caulobacter crescentus." Proceedings of the National Academy of Sciences of the United States of America 98 (7) doi:10.1073/pnas.061029298
Yuan Q, Quackenbush J, Sultana R, Pertea M, Salzberg S L, Buell C R 2001. "Rice bioinformatics. analysis of rice sequence data and leveraging the data to other plant species." Plant physiology 125 (3) doi:
Pertea M, Lin X, Salzberg S L 2001. "GeneSplicer: a new computational method for splice site prediction." Nucleic acids research 29 (5) doi:
Ermolaeva M D, White O, Salzberg S L 2001. "Prediction of operons in microbial genomes." Nucleic acids research 29 (5) doi:
Volfovsky N, Haas B J, Salzberg S L 2001. "A clustering method for repeat analysis in DNA sequences." Genome biology 2 (8) doi:


Theologis A, Ecker J R, Palm C J, Federspiel N A, Kaul S, et al. 2000. "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana." Nature 408 (6814) doi:10.1038/35048500
Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, et al. 2000. "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana." Nature 408 (6814) doi:10.1038/35048706
Liang F, Holt I, Pertea G, Karamycheva S, Salzberg S L, Quackenbush J 2000. "An optimized protocol for analysis of EST sequences." Nucleic acids research 28 (18) doi:
Fraser C M, Eisen J A, Salzberg S L 2000. "Microbial genome sequencing." Nature 406 (6797) doi:10.1038/35021244
Ermolaeva M D, Khalak H G, White O, Smith H O, Salzberg S L 2000. "Prediction of transcription terminators in bacterial genomes." Journal of molecular biology 301 (1) doi:10.1006/jmbi.2000.3836
Heidelberg J F, Eisen J A, Nelson W C, Clayton R A, Gwinn M L, et al. 2000. "DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae." Nature 406 (6795) doi:10.1038/35020000
Liang F, Holt I, Pertea G, Karamycheva S, Salzberg S L, Quackenbush J 2000. "Gene index analysis of the human genome estimates approximately 120,000 genes." Nature genetics 25 (2) doi:10.1038/76126
Read T D, Brunham R C, Shen C, Gill S R, Heidelberg J F, et al. 2000. "Genome sequences of Chlamydia trachomatis MoPn and Chlamydia pneumoniae AR39." Nucleic acids research 28 (6) doi:
Tettelin H, Saunders N J, Heidelberg J, Jeffries A C, Nelson K E, et al. 2000. "Complete genome sequence of Neisseria meningitidis serogroup B strain MC58." Science (New York, N.Y.) 287 (5459) doi:
Eisen J A, Heidelberg J F, White O, Salzberg S L 2000. "Evidence for symmetric chromosomal inversions around the replication origin in bacteria." Genome biology 1 (6) doi:10.1186/gb-2000-1-6-research0011


Lin X, Kaul S, Rounsley S, Shea T P, Benito M I, et al. 1999. "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana." Nature 402 (6763) doi:10.1038/45471
Tettelin H, Radune D, Kasif S, Khouri H, Salzberg S L 1999. "Optimized multiplex PCR: efficiently closing a whole-genome shotgun sequencing project." Genomics 62 (3) doi:10.1006/geno.1999.6048
Delcher A L, Harmon D, Kasif S, White O, Salzberg S L 1999. "Improved microbial gene identification with GLIMMER." Nucleic acids research 27 (23) doi:
Salzberg S L, Pertea M, Delcher A L, Gardner M J, Tettelin H 1999. "Interpolated Markov models for eukaryotic gene finding." Genomics 59 (1) doi:10.1006/geno.1999.5854
Delcher A L, Kasif S, Fleischmann R D, Peterson J, White O, Salzberg S L 1999. "Alignment of whole genomes." Nucleic acids research 27 (11) doi:
Nelson K E, Clayton R A, Gill S R, Gwinn M L, Dodson R J, et al. 1999. "Evidence for lateral gene transfer between Archaea and bacteria from genome sequence of Thermotoga maritima." Nature 399 (6734) doi:10.1038/20601
Smith H O, Gwinn M L, Salzberg S L 1999. "DNA uptake signal sequences in naturally transformable bacteria." Research in microbiology 150 (9-10) doi:


Salzberg S L, Salzberg A J, Kerlavage A R, Tomb J F 1998. "Skewed oligomers and origins of replication." Gene 217 (1-2) doi:
Salzberg S L, Delcher A L, Kasif S, White O 1998. "Microbial gene identification using interpolated Markov models." Nucleic acids research 26 (2) doi:


Salzberg S L 1997. "A method for identifying splice sites and translational start sites in eukaryotic mRNA." Computer applications in the biosciences : CABIOS 13 (4) doi: