Lynch Michael

Top coauthors of Lynch Michael

Sung Way (18 papers)

Thomas W Kelley (15 papers)

Doak Thomas G (12 papers)

Schaack Sarah (9 papers)

Ackerman Matthew S (9 papers)

List of Lynch Michael publications


Lynch Michael, Gutenkunst Ryan, Ackerman Matthew, Spitze Ken, Ye Zhiqiang, et al. 2017. "Population Genomics of Daphnia pulex." Genetics 206 (1) doi:10.1534/genetics.116.190611


Dillon Marcus M, Sung Way, Sebra Robert, Lynch Michael, Cooper Vaughn S 2016. "Genome-wide biases in the rate and molecular spectrum of spontaneous mutations in Vibrio cholerae and Vibrio fischeri." Molecular biology and evolution doi:10.1093/molbev/msw224
Lynch Michael, Ackerman Matthew S, Gout Jean-Francois, Long Hongan, Sung Way, et al. 2016. "Genetic drift, selection and the evolution of the mutation rate." Nature reviews. Genetics 17 (11) doi:10.1038/nrg.2016.104
Long Hongan, Winter David J, Chang Allan Y-C, Sung Way, Wu Steven H, et al. 2016. "Low base-substitution mutation rate in the germline genome of the ciliate Tetrahymena thermophila." Genome biology and evolution doi:10.1093/gbe/evw223
Raborn R Taylor, Spitze Ken, Brendel Volker P, Lynch Michael 2016. "Promoter Architecture and Sex-Specific Gene Expression in Daphnia pulex." Genetics doi:10.1534/genetics.116.193334
Sung Way, Ackerman Matthew S, Dillon Marcus M, Platt Thomas G, Fuqua Clay, et al. 2016. "Evolution of the Insertion-Deletion Mutation Rate Across the Tree of Life." G3 (Bethesda, Md.) doi:10.1534/g3.116.030890
Kucukyildirim Sibel, Long Hongan, Sung Way, Miller Samuel F, Doak Thomas G, Lynch Michael 2016. "The Rate and Spectrum of Spontaneous Mutations in Mycobacterium smegmatis, a Bacterium Naturally Devoid of the Post-replicative Mismatch Repair Pathway." G3 (Bethesda, Md.) doi:10.1534/g3.116.030130
Long Hongan, Miller Samuel F, Strauss Chloe, Zhao Chaoxian, Cheng Lei, et al. 2016. "Antibiotic treatment enhances the genome-wide mutation rate of target cells." Proceedings of the National Academy of Sciences of the United States of America doi:10.1073/pnas.1601208113
Bréchignac François, Oughton Deborah, Mays Claire, Barnthouse Lawrence, Beasley James C, et al. 2016. "Addressing ecological effects of radiation on populations and ecosystems to improve protection of the environment against radiation: Agreed statements from a Consensus Symposium." Journal of environmental radioactivity 158-159 doi:10.1016/j.jenvrad.2016.03.021
Griffin Jamie T, Bhatt Samir, Sinka Marianne E, Gething Peter W, Lynch Michael, et al. 2016. "Potential for reduction of burden and local elimination of malaria by reducing Plasmodium falciparum malaria transmission: a mathematical modelling study." The Lancet. Infectious diseases 16 (4) doi:10.1016/S1473-3099(15)00423-5
Legione Alistair R, Amery-Gale Jemima, Lynch Michael, Haynes Leesa, Gilkerson James R, et al. 2016. "CHLAMYDIA PECORUM INFECTION IN FREE-RANGING KOALAS ( PHASCOLARCTOS CINEREUS ) ON FRENCH ISLAND, VICTORIA, AUSTRALIA." Journal of wildlife diseases doi:10.7589/2015-10-276
Lynch Michael 2016. "Mutation and Human Exceptionalism: Our Future Genetic Load." Genetics 202 (3) doi:10.1534/genetics.115.180471
Legione Alistair R, Patterson Jade L S, Whiteley Pam L, Amery-Gale Jemima, Lynch Michael, et al. 2016. "Identification of unusual Chlamydia pecorum genotypes in Victorian koalas (Phascolarctos cinereus) and clinical variables associated with infection." Journal of medical microbiology doi:10.1099/jmm.0.000241
Keith Nathan, Tucker Abraham E, Jackson Craig E, Sung Way, Lucas Lledó José Ignacio, et al. 2016. "High mutational rates of large-scale duplication and deletion in Daphnia pulex." Genome research 26 (1) doi:10.1101/gr.191338.115
Marinov Georgi K, Lynch Michael 2016. "Conservation and divergence of the histone code in nucleomorphs." Biology direct 11 (1) doi:10.1186/s13062-016-0119-4
Cibulskis Richard E, Alonso Pedro, Aponte John, Aregawi Maru, Barrette Amy, et al. 2016. "Malaria: Global progress 2000 - 2015 and future challenges." Infectious diseases of poverty 5 (1) doi:10.1186/s40249-016-0151-8
Theiss-Nyland Katherine, Lynch Michael, Lines Jo 2016. "Assessing the availability of LLINs for continuous distribution through routine antenatal care and the Expanded Programme on Immunizations in sub-Saharan Africa." Malaria journal 15 (1) doi:10.1186/s12936-016-1309-3


Lynch Michael, Marinov Georgi K 2015. "The bioenergetic costs of a gene." Proceedings of the National Academy of Sciences of the United States of America 112 (51) doi:10.1073/pnas.1514974112
Xu Sen, Spitze Ken, Ackerman Matthew S, Ye Zhiqiang, Bright Lydia, et al. 2015. "Hybridization and the Origin of Contagious Asexuality in Daphnia pulex." Molecular biology and evolution 32 (12) doi:10.1093/molbev/msv190
Lynch Michael, Manly Jody Todd, Cicchetti Dante 2015. "A multilevel prediction of physiological response to challenge: Interactions among child maltreatment, neighborhood crime, endothelial nitric oxide synthase gene (eNOS), and GABA(A) receptor subunit alpha-6 gene (GABRA6)." Development and psychopathology 27 (4 Pt 2) doi:10.1017/S0954579415000887
Maruki Takahiro, Lynch Michael 2015. "Genotype-Frequency Estimation from High-Throughput Sequencing Data." Genetics 201 (2) doi:10.1534/genetics.115.179077
Farlow Ashley, Long Hongan, Arnoux Stéphanie, Sung Way, Doak Thomas G, et al. 2015. "The Spontaneous Mutation Rate in the Fission Yeast Schizosaccharomyces pombe." Genetics 201 (2) doi:10.1534/genetics.115.177329
Xu Sen, Ackerman Matthew S, Long Hongan, Bright Lydia, Spitze Ken, et al. 2015. "A Male-Specific Genetic Map of the Microcrustacean Daphnia pulex Based on Single-Sperm Whole-Genome Sequencing." Genetics 201 (1) doi:10.1534/genetics.115.179028
Long Hongan, Kucukyildirim Sibel, Sung Way, Williams Emily, Lee Heewook, et al. 2015. "Background Mutational Features of the Radiation-Resistant Bacterium Deinococcus radiodurans." Molecular biology and evolution 32 (9) doi:10.1093/molbev/msv119
Gout Jean-Francois, Lynch Michael 2015. "Maintenance and Loss of Duplicated Genes by Dosage Subfunctionalization." Molecular biology and evolution 32 (8) doi:10.1093/molbev/msv095
Dillon Marcus M, Sung Way, Lynch Michael, Cooper Vaughn S 2015. "The Rate and Molecular Spectrum of Spontaneous Mutations in the GC-Rich Multichromosome Genome of Burkholderia cenocepacia." Genetics 200 (3) doi:10.1534/genetics.115.176834
Sung Way, Ackerman Matthew S, Gout Jean-François, Miller Samuel F, Williams Emily, et al. 2015. "Asymmetric Context-Dependent Mutation Patterns Revealed through Mutation-Accumulation Experiments." Molecular biology and evolution 32 (7) doi:10.1093/molbev/msv055
Gallob John T, Lynch Michael, Charles Christine, Ricci-Nittel Danette, Mordas Carolyn, et al. 2015. "A randomized trial of ethyl lauroyl arginate-containing mouthrinse in the control of gingivitis." Journal of clinical periodontology doi:10.1111/jcpe.12428
Wityak John, McGee Kevin F, Conlon Michael P, Song Ren Hua, Duffy Bryan C, et al. 2015. "Lead optimization toward proof-of-concept tools for Huntington's disease within a 4-(1H-pyrazol-4-yl)pyrimidine class of pan-JNK inhibitors." Journal of medicinal chemistry 58 (7) doi:10.1021/jm5013598
Patterson Jade L S, Lynch Michael, Anderson Garry A, Noormohammadi Amir H, Legione Alistair, et al. 2015. "The prevalence and clinical significance of Chlamydia infection in island and mainland populations of Victorian koalas (Phascolarctos cinereus)." Journal of wildlife diseases 51 (2) doi:10.7589/2014-07-176
Lynch Michael, Hagner Kyle 2015. "Evolutionary meandering of intermolecular interactions along the drift barrier." Proceedings of the National Academy of Sciences of the United States of America 112 (1) doi:10.1073/pnas.1421641112
Suzuki Haruo, Dapper Amy L, Jackson Craig E, Lee Heewook, Pejaver Vikas, et al. 2015. "Draft Genome Sequence of Caedibacter varicaedens, a Kappa Killer Endosymbiont Bacterium of the Ciliate Paramecium biaurelia." Genome announcements 3 (6) doi:10.1128/genomeA.01310-15
Bhatt Samir, Weiss Daniel J, Mappin Bonnie, Dalrymple Ursula, Cameron Ewan, et al. 2015. "Coverage and system efficiencies of insecticide-treated nets in Africa from 2000 to 2017." eLife 4 doi:10.7554/eLife.09672
Andrews Kathryn G, Lynch Michael, Eckert Erin, Gutman Julie 2015. "Missed opportunities to deliver intermittent preventive treatment for malaria to pregnant women 2003-2013: a systematic analysis of 58 household surveys in sub-Saharan Africa." Malaria journal 14 doi:10.1186/s12936-015-1033-4
Marinov Georgi K, Lynch Michael 2015. "Diversity and Divergence of Dinoflagellate Histone Proteins." G3 (Bethesda, Md.) 6 (2) doi:10.1534/g3.115.023275
Long Hongan, Sung Way, Miller Samuel F, Ackerman Matthew S, Doak Thomas G, Lynch Michael 2015. "Mutation rate, spectrum, topology, and context-dependency in the DNA mismatch repair-deficient Pseudomonas fluorescens ATCC948." Genome biology and evolution 7 (1) doi:10.1093/gbe/evu284


Lynch Michael, Field Mark C, Goodson Holly V, Malik Harmit S, Pereira-Leal José B, et al. 2014. "Evolutionary cell biology: two origins, one objective." Proceedings of the National Academy of Sciences of the United States of America 111 (48) doi:10.1073/pnas.1415861111
Sazer Shelley, Lynch Michael, Needleman Daniel 2014. "Deciphering the evolutionary history of open and closed mitosis." Current biology : CB 24 (22) doi:10.1016/j.cub.2014.10.011
McGrath Casey L, Gout Jean-Francois, Johri Parul, Doak Thomas G, Lynch Michael 2014. "Differential retention and divergent resolution of duplicate genes following whole-genome duplication." Genome research 24 (10) doi:10.1101/gr.173740.114
Lynch Michael, Xu Sen, Maruki Takahiro, Jiang Xiaoqian, Pfaffelhuber Peter, Haubold Bernhard 2014. "Genome-wide linkage-disequilibrium profiles from single individuals." Genetics 198 (1) doi:10.1534/genetics.114.166843
Li Wenli, Kuzoff Robert, Wong Chen Khuan, Tucker Abraham, Lynch Michael 2014. "Characterization of newly gained introns in Daphnia populations." Genome biology and evolution 6 (9) doi:10.1093/gbe/evu174
Maruki Takahiro, Lynch Michael 2014. "Genome-wide estimation of linkage disequilibrium from population-level high-throughput sequencing data." Genetics 197 (4) doi:10.1534/genetics.114.165514
McGrath Casey L, Gout Jean-Francois, Doak Thomas G, Yanagi Akira, Lynch Michael 2014. "Insights into three whole-genome duplications gleaned from the Paramecium caudatum genome sequence." Genetics 197 (4) doi:10.1534/genetics.114.163287
Lynch Michael, Bost Darius, Wilson Sade, Maruki Takahiro, Harrison Scott 2014. "Population-genetic inference from pooled-sequencing data." Genome biology and evolution 6 (5) doi:10.1093/gbe/evu085
Aregawi Maru, Lynch Michael, Bekele Worku, Kebede Henok, Jima Daddi, et al. 2014. "Time series analysis of trends in malaria cases and deaths at hospitals and the effect of antimalarial interventions, 2001-2011, Ethiopia." PloS one 9 (11) doi:10.1371/journal.pone.0106359


Boscaro Vittorio, Felletti Michele, Vannini Claudia, Ackerman Matthew S, Chain Patrick S G, et al. 2013. "Polynucleobacter necessarius, a model for genome reduction in both free-living and symbiotic bacteria." Proceedings of the National Academy of Sciences of the United States of America 110 (46) doi:10.1073/pnas.1316687110
Gout Jean-François, Thomas W Kelley, Smith Zachary, Okamoto Kazufusa, Lynch Michael 2013. "Large-scale detection of in vivo transcription errors." Proceedings of the National Academy of Sciences of the United States of America 110 (46) doi:10.1073/pnas.1309843110
Tucker Abraham E, Ackerman Matthew S, Eads Brian D, Xu Sen, Lynch Michael 2013. "Population-genomic insights into the evolutionary origin and fate of obligately asexual Daphnia pulex." Proceedings of the National Academy of Sciences of the United States of America 110 (39) doi:10.1073/pnas.1313388110
Xu Sen, Innes David J, Lynch Michael, Cristescu Melania E 2013. "The role of hybridization in the origin and spread of asexuality in Daphnia." Molecular ecology 22 (17) doi:10.1111/mec.12407
Manly Jody Todd, Lynch Michael, Oshri Assaf, Herzog Margaret, Wortel Sanne N 2013. "The impact of neglect on initial adaptation to school." Child maltreatment 18 (3) doi:10.1177/1077559513496144
Lynch Michael 2013. "Evolutionary diversification of the multimeric states of proteins." Proceedings of the National Academy of Sciences of the United States of America 110 (30) doi:10.1073/pnas.1310980110
Schrider Daniel R, Houle David, Lynch Michael, Hahn Matthew W 2013. "Rates and Genomic Consequences of Spontaneous Mutational Events in Drosophila melanogaster." Genetics doi:10.1534/genetics.113.151670
Catania Francesco, Lynch Michael 2013. "A simple model to explain evolutionary trends of eukaryotic gene architecture and expression: How competition between splicing and cleavage/polyadenylation factors may affect gene expression and splice-site recognition in eukaryotes." BioEssays : news and reviews in molecular, cellular and developmental biology 35 (6) doi:10.1002/bies.201200127
Ibarra-Laclette Enrique, Lyons Eric, Hernández-Guzmán Gustavo, Pérez-Torres Claudia Anahí, Carretero-Paulet Lorenzo, et al. 2013. "Architecture and evolution of a minute plant genome." Nature doi:10.1038/nature12132
Boyle Nanette R, Reynolds T Steele, Evans Ron, Lynch Michael, Gill Ryan T 2013. "Recombineering to homogeneity: extension of multiplex recombineering to large-scale genome editing." Biotechnology journal 8 (5) doi:10.1002/biot.201200237
Ramos Paul, Lynch Michael, Hu Min, Arnould John P Y, Norman Richard, Beveridge Ian 2013. "Morphometric and molecular characterization of the species of Uncinaria Frölich, 1789 (Nematoda) parasitic in the Australian fur seal Arctocephalus pusillus doriferus (Schreber), with notes on hookworms in three other pinniped hosts." Systematic parasitology 85 (1) doi:10.1007/s11230-013-9407-x
Lynch Michael 2013. "Science, truth, and forensic cultures: the exceptional legal status of DNA evidence." Studies in history and philosophy of biological and biomedical sciences 44 (1) doi:10.1016/j.shpsc.2012.09.008
Raymann Kasie, Bobay Louis-Marie, Doak Thomas G, Lynch Michael, Gribaldo Simonetta 2013. "A genomic survey of Reb homologs suggests widespread occurrence of R-bodies in proteobacteria." G3 (Bethesda, Md.) 3 (3) doi:10.1534/g3.112.005231
Latta Leigh C, Morgan Kendall K, Weaver Casse S, Allen Desiree, Schaack Sarah, Lynch Michael 2013. "Genomic background and generation time influence deleterious mutation rates in Daphnia." Genetics 193 (2) doi:10.1534/genetics.112.146571
Manly Jody Todd, Oshri Assaf, Lynch Michael, Herzog Margaret, Wortel Sanne 2013. "Child neglect and the development of externalizing behavior problems: associations with maternal drug dependence and neighborhood crime." Child maltreatment 18 (1) doi:10.1177/1077559512464119
Juliao Patricia C, Maslanka Susan, Dykes Janet, Gaul Linda, Bagdure Satish, et al. 2013. "National outbreak of type a foodborne botulism associated with a widely distributed commercially canned hot dog chili sauce." Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 56 (3) doi:10.1093/cid/cis901
Menon Manoj, Graves Lewis, McCombs Katherine, Hise Kelly, Silk Benjamin, et al. 2013. "Listeria monocytogenes in donated platelets: a potential transfusion-transmitted pathogen intercepted through screening." Transfusion doi:10.1111/trf.12097
Maple-Brown Louise J, Brown Alex, Lee I-Lynn, Connors Christine, Oats Jeremy, et al. 2013. "Pregnancy And Neonatal Diabetes Outcomes in Remote Australia (PANDORA) Study." BMC pregnancy and childbirth 13 doi:10.1186/1471-2393-13-221
Garst Andrew, Lynch Michael, Evans Ron, Gill Ryan T 2013. "Strategies for the multiplex mapping of genes to traits." Microbial cell factories 12 doi:10.1186/1475-2859-12-99
Catania Francesco, McGrath Casey L, Doak Thomas G, Lynch Michael 2013. "Spliced DNA sequences in the Paramecium germline: their properties and evolutionary potential." Genome biology and evolution 5 (6) doi:10.1093/gbe/evt087
Jenke Dennis, Castner James, Egert Thomas, Feinberg Tom, Hendricker Alan, et al. 2013. "Extractables characterization for five materials of construction representative of packaging systems used for parenteral and ophthalmic drug products." PDA journal of pharmaceutical science and technology / PDA 67 (5) doi:10.5731/pdajpst.2013.00933


Sung Way, Tucker Abraham E, Doak Thomas G, Choi Eunjin, Thomas W Kelley, Lynch Michael 2012. "Extraordinary genome stability in the ciliate Paramecium tetraurelia." Proceedings of the National Academy of Sciences of the United States of America 109 (47) doi:10.1073/pnas.1210663109
Lynch Michael 2012. "Evolutionary layering and the limits to cellular perfection." Proceedings of the National Academy of Sciences of the United States of America 109 (46) doi:10.1073/pnas.1216130109
Sung Way, Ackerman Matthew S, Miller Samuel F, Doak Thomas G, Lynch Michael 2012. "Drift-barrier hypothesis and mutation-rate evolution." Proceedings of the National Academy of Sciences of the United States of America 109 (45) doi:10.1073/pnas.1216223109
Chen Kangming, Gu Liping, Xiang Xianling, Lynch Michael, Zhou Ruanbao 2012. "Identification and characterization of five intramembrane metalloproteases in Anabaena variabilis." Journal of bacteriology 194 (22) doi:10.1128/JB.01366-12
Kornek Miroslaw, Lynch Michael, Mehta Shruti H, Lai Michelle, Exley Mark, et al. 2012. "Circulating microparticles as disease-specific biomarkers of severity of inflammation in patients with hepatitis C or nonalcoholic steatohepatitis." Gastroenterology 143 (2) doi:10.1053/j.gastro.2012.04.031
Lynch Michael 2012. "The evolution of multimeric protein assemblages." Molecular biology and evolution 29 (5) doi:10.1093/molbev/msr300
Allen Desiree E, Lynch Michael 2012. "The effect of variable frequency of sexual reproduction on the genetic structure of natural populations of a cyclical parthenogen." Evolution; international journal of organic evolution 66 (3) doi:10.1111/j.1558-5646.2011.01488.x
Langer Adam J, Ayers Tracy, Grass Julian, Lynch Michael, Angulo Frederick J, Mahon Barbara E 2012. "Nonpasteurized dairy products, disease outbreaks, and state laws-United States, 1993-2006." Emerging infectious diseases 18 (3) doi:10.3201/eid1803.111370
Xu Sen, Schaack Sarah, Seyfert Amanda, Choi Eunjin, Lynch Michael, Cristescu Melania E 2012. "High mutation rates in the mitochondrial genomes of Daphnia pulex." Molecular biology and evolution 29 (2) doi:10.1093/molbev/msr243
Eads Brian D, Tsuchiya Dai, Andrews Justen, Lynch Michael, Zolan Miriam E 2012. "The spread of a transposon insertion in Rec8 is associated with obligate asexuality in Daphnia." Proceedings of the National Academy of Sciences of the United States of America 109 (3) doi:10.1073/pnas.1119667109
Karema Corine, Aregawi Maru W, Rukundo Alphonse, Kabayiza Alain, Mulindahabi Monique, et al. 2012. "Trends in malaria cases, hospital admissions and deaths following scale-up of anti-malarial interventions, 2000-2010, Rwanda." Malaria journal 11 doi:10.1186/1475-2875-11-236


Lu Qiaoyin, Guo Weihua, Nawrocka Marta, Abdullaev Azat, Daunt Chris, et al. 2011. "Single mode lasers based on slots suitable for photonic integration." Optics express 19 (26) doi:
Lynch Michael, Taylor Trevor K, Duignan Pádraig J, Swingler Jane, Marenda Marc, et al. 2011. "Mycoplasmas in Australian fur seals (Arctocephalus pusillus doriferus): identification and association with abortion." Journal of veterinary diagnostic investigation : official publication of the American Association of Veterinary Laboratory Diagnosticians, Inc 23 (6) doi:10.1177/1040638711425699
Tauxe Robert V, Lynch Michael, Lambert Yves, Sobel Jeremy, Domerçant Jean W, Khan Azharul 2011. "Rapid development and use of a nationwide training program for cholera management, Haiti, 2010." Emerging infectious diseases 17 (11) doi:10.3201/eid1711.110857
Lynch Michael, Bobay Louis-Marie, Catania Francesco, Gout Jean-François, Rho Mina 2011. "The repatterning of eukaryotic genomes by random genetic drift." Annual review of genomics and human genetics 12 doi:10.1146/annurev-genom-082410-101412
Grundon Rachael A, Anderson Gary A, Lynch Michael, Hardman Chlöe, O'Reilly Anu, Stanley Robin G 2011. "Schirmer tear tests and intraocular pressures in conscious and anesthetized koalas (Phascolarctus cinereus)." Veterinary ophthalmology 14 (5) doi:10.1111/j.1463-5224.2010.00872.x
Sheth Anandi N, Hoekstra Mike, Patel Nehal, Ewald Gwen, Lord Cathy, et al. 2011. "A national outbreak of Salmonella serotype Tennessee infections from contaminated peanut butter: a new food vehicle for salmonellosis in the United States." Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 53 (4) doi:10.1093/cid/cir407
Lynch Michael, Nielsen Ole, Duignan Pádraig J, Kirkwood Roger, Hoskins Andrew, Arnould John P Y 2011. "Serologic survey for potential pathogens and assessment of disease risk in Australian fur seals." Journal of wildlife diseases 47 (3) doi:
Fernández Ariel, Lynch Michael 2011. "Non-adaptive origins of interactome complexity." Nature 474 (7352) doi:10.1038/nature09992
Lynch Michael, Duignan Pádraig J, Taylor Trevor, Nielsen Ole, Kirkwood Roger, et al. 2011. "Epizootiology of Brucella infection in Australian fur seals." Journal of wildlife diseases 47 (2) doi:
Lucas-Lledó J Ignacio, Maddamsetti Rohan, Lynch Michael 2011. "Phylogenomic analysis of the uracil-DNA glycosylase superfamily." Molecular biology and evolution 28 (3) doi:10.1093/molbev/msq318
Lipinski Kendra J, Farslow James C, Fitzpatrick Kelly A, Lynch Michael, Katju Vaishali, Bergthorsson Ulfar 2011. "High spontaneous rate of gene duplication in Caenorhabditis elegans." Current biology : CB 21 (4) doi:10.1016/j.cub.2011.01.026
Colbourne John K, Pfrender Michael E, Gilbert Donald, Thomas W Kelley, Tucker Abraham, et al. 2011. "The ecoresponsive genome of Daphnia pulex." Science (New York, N.Y.) 331 (6017) doi:10.1126/science.1197761
Adler Peter, Lynch Michael, Katz Kenneth, Lyons John M, Ochoa Juan, King Christopher 2011. "Hypothermia: an unusual indication for gastric lavage." The Journal of emergency medicine 40 (2) doi:10.1016/j.jemermed.2008.11.024
Lynch Michael 2011. "The lower bound to the evolution of mutation rates." Genome biology and evolution 3 doi:10.1093/gbe/evr066
Guh Alice, Reed Carrie, Gould L Hannah, Kutty Preeta, Iuliano Danielle, et al. 2011. "Transmission of 2009 pandemic influenza A (H1N1) at a Public University--Delaware, April-May 2009." Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 52 Suppl 1 doi:10.1093/cid/ciq029


Yang Zhicai, Fairfax David J, Maeng Jun-Ho, Masih Liaqat, Usyatinsky Alexander, et al. 2010. "Discovery of 2-substituted benzoxazole carboxamides as 5-HT3 receptor antagonists." Bioorganic & medicinal chemistry letters 20 (22) doi:10.1016/j.bmcl.2010.09.038
Lynch Michael 2010. "Scaling expectations for the time to establishment of complex adaptations." Proceedings of the National Academy of Sciences of the United States of America 107 (38) doi:10.1073/pnas.1010836107
Schaack Sarah, Pritham Ellen J, Wolf Abby, Lynch Michael 2010. "DNA transposon dynamics in populations of Daphnia pulex with and without sex." Proceedings. Biological sciences / The Royal Society 277 (1692) doi:10.1098/rspb.2009.2253
Lynch Michael 2010. "Evolution of the mutation rate." Trends in genetics : TIG 26 (8) doi:10.1016/j.tig.2010.05.003
Lynch Michael, Abegg Adam 2010. "The rate of establishment of complex adaptations." Molecular biology and evolution 27 (6) doi:10.1093/molbev/msq020
France Anne Marie, Jackson Michael, Schrag Stephanie, Lynch Michael, Zimmerman Christopher, et al. 2010. "Household transmission of 2009 influenza A (H1N1) virus after a school-based outbreak in New York City, April-May 2009." The Journal of infectious diseases 201 (7) doi:10.1086/651145
Haubold Bernhard, Pfaffelhuber Peter, Lynch Michael 2010. "mlRho - a program for estimating the population mutation and recombination rates from shotgun-sequenced diploid genomes." Molecular ecology 19 Suppl 1 doi:10.1111/j.1365-294X.2009.04482.x
Lynch Michael 2010. "Rate, molecular spectrum, and consequences of human mutation." Proceedings of the National Academy of Sciences of the United States of America 107 (3) doi:10.1073/pnas.0912629107
Catania Francesco, Lynch Michael 2010. "Evolutionary dynamics of a conserved sequence motif in the ribosomal genes of the ciliate Paramecium." BMC evolutionary biology 10 doi:10.1186/1471-2148-10-129
Schaack Sarah, Choi Eunjin, Lynch Michael, Pritham Ellen J 2010. "DNA transposons and the role of recombination in mutation accumulation in Daphnia pulex." Genome biology 11 (4) doi:10.1186/gb-2010-11-4-r46
Sung Way, Tucker Abraham, Bergeron R Daniel, Lynch Michael, Thomas W Kelley 2010. "Simple sequence repeat variation in the Daphnia pulex genome." BMC genomics 11 doi:10.1186/1471-2164-11-691
Rho Mina, Schaack Sarah, Gao Xiang, Kim Sun, Lynch Michael, Tang Haixu 2010. "LTR retroelements in the genome of Daphnia pulex." BMC genomics 11 doi:10.1186/1471-2164-11-425
Ossowski Stephan, Schneeberger Korbinian, Lucas-Lledó José Ignacio, Warthmann Norman, Clark Richard M, et al. 2010. "The rate and molecular spectrum of spontaneous mutations in Arabidopsis thaliana." Science (New York, N.Y.) 327 (5961) doi:10.1126/science.1180677


Iuliano A Danielle, Reed Carrie, Guh Alice, Desai Mitesh, Dee D L, et al. 2009. "Notes from the field: outbreak of 2009 pandemic influenza A (H1N1) virus at a large public university in Delaware, April-May 2009." Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 49 (12) doi:10.1086/649555
Gao Xiang, Lynch Michael 2009. "Ubiquitous internal gene duplication and intron creation in eukaryotes." Proceedings of the National Academy of Sciences of the United States of America 106 (49) doi:10.1073/pnas.0911093106
Pineda-Vadillo Pablo, Lynch Michael, Charlton Christy, Donegan John F, Weldon Vincent 2009. "Non-resonant wavelength modulation saturation spectroscopy in acetylene-filled hollow-core photonic bandgap fibres applied to modulation-free laser diode stabilisation." Optics express 17 (25) doi:
Li Wenli, Tucker Abraham E, Sung Way, Thomas W Kelley, Lynch Michael 2009. "Extensive, recent intron gains in Daphnia populations." Science (New York, N.Y.) 326 (5957) doi:10.1126/science.1179302
Denver Dee R, Dolan Peter C, Wilhelm Larry J, Sung Way, Lucas-Lledó J Ignacio, et al. 2009. "A genome-wide view of Caenorhabditis elegans base-substitution mutation processes." Proceedings of the National Academy of Sciences of the United States of America 106 (38) doi:10.1073/pnas.0904895106
Omilian Angela R, Lynch Michael 2009. "Patterns of intraspecific DNA variation in the Daphnia nuclear genome." Genetics 182 (1) doi:10.1534/genetics.108.099549
Lucas-Lledó José Ignacio, Lynch Michael 2009. "Evolution of mutation rates: phylogenomic analysis of the photolyase/cryptochrome family." Molecular biology and evolution 26 (5) doi:10.1093/molbev/msp029
Lynch Michael 2009. "Estimation of allele frequencies from high-coverage genome-sequencing projects." Genetics 182 (1) doi:10.1534/genetics.109.100479
Catania Francesco, Wurmser François, Potekhin Alexey A, Przybos Ewa, Lynch Michael 2009. "Genetic diversity in the Paramecium aurelia species complex." Molecular biology and evolution 26 (2) doi:10.1093/molbev/msn266
Rho Mina, Zhou Mo, Gao Xiang, Kim Sun, Tang Haixu, Lynch Michael 2009. "Independent mammalian genome contractions following the KT boundary." Genome biology and evolution 1 doi:10.1093/gbe/evp007
Peñalva-Arana D Carolina, Lynch Michael, Robertson Hugh M 2009. "The chemoreceptor genes of the waterflea Daphnia pulex: many Grs but no Ors." BMC evolutionary biology 9 doi:10.1186/1471-2148-9-79
Malek Mark, Barzilay Ezra, Kramer Adam, Camp Brendan, Jaykus Lee-Ann, et al. 2009. "Outbreak of norovirus infection among river rafters associated with packaged delicatessen meat, Grand Canyon, 2005." Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 48 (1) doi:10.1086/594118


Lynch Michael 2008. "Estimation of nucleotide diversity, disequilibrium coefficients, and mutation rates from high-coverage genome-sequencing projects." Molecular biology and evolution 25 (11) doi:10.1093/molbev/msn185
Scofield Douglas G, Lynch Michael 2008. "Evolutionary diversification of the Sm family of RNA-associated proteins." Molecular biology and evolution 25 (11) doi:10.1093/molbev/msn175
Lynch Michael 2008. "The cellular, developmental and population-genetic determinants of mutation-rate evolution." Genetics 180 (2) doi:10.1534/genetics.108.090456
Omilian Angela R, Scofield Douglas G, Lynch Michael 2008. "Intron presence-absence polymorphisms in Daphnia." Molecular biology and evolution 25 (10) doi:10.1093/molbev/msn164
Lynch Michael, Seyfert Amanda, Eads Brian, Williams Emily 2008. "Localization of the genetic determinants of meiosis suppression in Daphnia pulex." Genetics 180 (1) doi:10.1534/genetics.107.084657
Haag-Liautard Cathy, Coffey Nicole, Houle David, Lynch Michael, Charlesworth Brian, Keightley Peter D 2008. "Direct estimation of the mitochondrial DNA mutation rate in Drosophila melanogaster." PLoS biology 6 (8) doi:10.1371/journal.pbio.0060204
Lynch Michael, Sung Way, Morris Krystalynne, Coffey Nicole, Landry Christian R, et al. 2008. "A genome-wide view of the spectrum of spontaneous mutations in yeast." Proceedings of the National Academy of Sciences of the United States of America 105 (27) doi:10.1073/pnas.0803466105
Allen Desiree E, Lynch Michael 2008. "Both costs and benefits of sex correlate with relative frequency of asexual reproduction in cyclically parthenogenic Daphnia pulicaria populations." Genetics 179 (3) doi:10.1534/genetics.107.082479
Seyfert Amanda L, Cristescu Melania E A, Frisse Linda, Schaack Sarah, Thomas W Kelley, Lynch Michael 2008. "The rate and spectrum of microsatellite mutation in Caenorhabditis elegans and Daphnia pulex." Genetics 178 (4) doi:10.1534/genetics.107.081927
Lynch Michael, Ghita Ovidiu, Whelan Paul F 2008. "Segmentation of the left ventricle of the heart in 3-D+t MRI data using an optimized nonrigid temporal model." IEEE transactions on medical imaging 27 (2) doi:10.1109/TMI.2007.904681


Lynch Michael 2007. "The evolution of genetic networks by non-adaptive processes." Nature reviews. Genetics 8 (10) doi:10.1038/nrg2192
Bowen Anna, Newman Alexandra, Estivariz Concepcion, Gilbertson Norene, Archer John, et al. 2007. "Role of acid-suppressing medications during a sustained outbreak of Salmonella enteritidis infection in a long-term care facility." Infection control and hospital epidemiology : the official journal of the Society of Hospital Epidemiologists of America 28 (10) doi:10.1086/520736
Lynch Michael 2007. "The frailty of adaptive hypotheses for the origins of organismal complexity." Proceedings of the National Academy of Sciences of the United States of America 104 Suppl 1 doi:10.1073/pnas.0702207104
Scofield Douglas G, Hong Xin, Lynch Michael 2007. "Position of the final intron in full-length transcripts: determined by NMD?" Molecular biology and evolution 24 (4) doi:10.1093/molbev/msm010
Rho Mina, Choi Jeong-Hyeon, Kim Sun, Lynch Michael, Tang Haixu 2007. "De novo identification of LTR retrotransposons in eukaryotic genomes." BMC genomics 8 doi:10.1186/1471-2164-8-90


Omilian Angela R, Cristescu Melania E A, Dudycha Jeffry L, Lynch Michael 2006. "Ameiotic recombination in asexual lineages of Daphnia." Proceedings of the National Academy of Sciences of the United States of America 103 (49) doi:10.1073/pnas.0606435103
Snoke Margaret S, Berendonk Thomas U, Barth Dana, Lynch Michael 2006. "Large global effective population sizes in Paramecium." Molecular biology and evolution 23 (12) doi:10.1093/molbev/msl128
Hong Xin, Scofield Douglas G, Lynch Michael 2006. "Intron size, abundance, and distribution within untranslated regions of genes." Molecular biology and evolution 23 (12) doi:10.1093/molbev/msl111
Lynch Michael, Painter John, Woodruff Rachel, Braden Christopher 2006. "Surveillance for foodborne-disease outbreaks--United States, 1998-2002." Morbidity and mortality weekly report. Surveillance summaries (Washington, D.C. : 2002) 55 (10) doi:
Cristescu Melania E A, Colbourne John K, Radivojac Jelena, Lynch Michael 2006. "A microsatellite-based genetic linkage map of the waterflea, Daphnia pulex: On the prospect of crustacean genomics." Genomics 88 (4) doi:10.1016/j.ygeno.2006.03.007
Denver Dee R, Feinberg Seth, Steding Catherine, Durbin Matthew, Lynch Michael 2006. "The relative roles of three DNA repair pathways in preventing Caenorhabditis elegans mutation accumulation." Genetics 174 (1) doi:10.1534/genetics.106.059840
Nettikadan Saju, Radke Korinna, Johnson James, Xu Juntao, Lynch Michael, et al. 2006. "Detection and quantification of protein biomarkers from fewer than 10 cells." Molecular & cellular proteomics : MCP 5 (5) doi:10.1074/mcp.M500350-MCP200
Katju Vaishali, Lynch Michael 2006. "On the formation of novel genes by duplication in the Caenorhabditis elegans genome." Molecular biology and evolution 23 (5) doi:10.1093/molbev/msj114
Weldon Vincent, McInerney David, Phelan Richard, Lynch Michael, Donegan John 2006. "Characteristics of several NIR tuneable diode lasers for spectroscopic based gas sensing: a comparison." Spectrochimica acta. Part A, Molecular and biomolecular spectroscopy 63 (5) doi:10.1016/j.saa.2005.10.051
Lynch Michael, Koskella Britt, Schaack Sarah 2006. "Mutation pressure and the evolution of organelle genomic architecture." Science (New York, N.Y.) 311 (5768) doi:10.1126/science.1118884
Paland Susanne, Lynch Michael 2006. "Transitions to asexuality result in excess amino acid substitutions." Science (New York, N.Y.) 311 (5763) doi:10.1126/science.1118152
Lynch Michael 2006. "The origins of eukaryotic gene structure." Molecular biology and evolution 23 (2) doi:10.1093/molbev/msj050
Lynch Michael 2006. "Streamlining and simplification of microbial genome architecture." Annual review of microbiology 60 doi:10.1146/annurev.micro.60.080805.142300
Robinson Christy D, Lourido Sebastian, Whelan Sean P, Dudycha Jeffry L, Lynch Michael, Isern Sharon 2006. "Viral transgenesis of embryonic cell cultures from the freshwater microcrustacean Daphnia." Journal of experimental zoology. Part A, Comparative experimental biology 305 (1) doi:10.1002/jez.a.250


Vengasandra Srikanth G, Lynch Michael, Xu Juntao, Henderson Eric 2005. "Microfluidic ultramicroscale deposition and patterning of quantum dots." Nanotechnology 16 (10) doi:10.1088/0957-4484/16/10/012
Phelan Richard, Lynch Michael, Donegan John F, Weldon Vincent 2005. "Simultaneous multispecies gas sensing by use of a sampled grating distributed Bragg reflector and modulated grating Y laser diode." Applied optics 44 (27) doi:
Lynch Michael 2005. "Simple evolutionary pathways to complex proteins." Protein science : a publication of the Protein Society 14 (9) doi:10.1110/ps.041171805
Ghita Ovidiu, Robinson Kevin, Lynch Michael, Whelan Paul F 2005. "MRI diffusion-based filtering: a note on performance characterisation." Computerized medical imaging and graphics : the official journal of the Computerized Medical Imaging Society 29 (4) doi:10.1016/j.compmedimag.2004.12.003
Estes Suzanne, Ajie Beverly C, Lynch Michael, Phillips Patrick C 2005. "Spontaneous mutational correlations for life-history, morphological and behavioral characters in Caenorhabditis elegans." Genetics 170 (2) doi:10.1534/genetics.104.040022
Ajie Beverly C, Estes Suzanne, Lynch Michael, Phillips Patrick C 2005. "Behavioral degradation under mutation accumulation in Caenorhabditis elegans." Genetics 170 (2) doi:10.1534/genetics.104.040014
Denver Dee R, Morris Krystalynne, Streelman J Todd, Kim Stuart K, Lynch Michael, Thomas W Kelley 2005. "The transcriptional consequences of mutation and natural selection in Caenorhabditis elegans." Nature genetics 37 (5) doi:10.1038/ng1554
Force Allan, Cresko William A, Pickett F Bryan, Proulx Steven R, Amemiya Chris, Lynch Michael 2005. "The origin of subfunctions and modular gene regulation." Genetics 170 (1) doi:10.1534/genetics.104.027607
Denver Dee R, Feinberg Seth, Estes Suzanne, Thomas W Kelley, Lynch Michael 2005. "Mutation rates, spectra and hotspots in mismatch repair-deficient Caenorhabditis elegans." Genetics 170 (1) doi:10.1534/genetics.104.038521
Baer Charles F, Shaw Frank, Steding Catherine, Baumgartner Margaret, Hawkins Alicia, et al. 2005. "Comparative evolutionary genetics of spontaneous mutations affecting fitness in rhabditid nematodes." Proceedings of the National Academy of Sciences of the United States of America 102 (16) doi:10.1073/pnas.0406056102
Paland Susanne, Colbourne John K, Lynch Michael 2005. "Evolutionary history of contagious asexuality in Daphnia pulex." Evolution; international journal of organic evolution 59 (4) doi:
Lynch Michael, Scofield Douglas G, Hong Xin 2005. "The evolution of transcription-initiation sites." Molecular biology and evolution 22 (4) doi:10.1093/molbev/msi100
Dudycha Jeffry L, Lynch Michael 2005. "Conserved ontogeny and allometric scaling of resource acquisition and allocation in the Daphniidae." Evolution; international journal of organic evolution 59 (3) doi:


Lynch Michael, Katju Vaishali 2004. "The altered evolutionary trajectories of gene duplicates." Trends in genetics : TIG 20 (11) doi:10.1016/j.tig.2004.09.001
Denver Dee R, Morris Krystalynne, Lynch Michael, Thomas W Kelley 2004. "High mutation rate and predominance of insertions in the Caenorhabditis elegans nuclear genome." Nature 430 (7000) doi:10.1038/nature02697
Lynch Michael, Mosher Curtis, Huff Janice, Nettikadan Saju, Johnson James, Henderson Eric 2004. "Functional protein nanoarrays for biomarker profiling." Proteomics 4 (6) doi:10.1002/pmic.200300701
Xu Juntao, Lynch Michael, Huff Janice L, Mosher Curtis, Vengasandra Srikanth, et al. 2004. "Microfabricated quill-type surface patterning tools for the creation of biological micro/nano arrays." Biomedical microdevices 6 (2) doi:
Denver Dee R, Morris Krystalynne, Kewalramani Avinash, Harris Katherine E, Chow Amy, et al. 2004. "Abundance, distribution, and mutation rates of homopolymeric nucleotide runs in the genome of Caenorhabditis elegans." Journal of molecular evolution 58 (5) doi:10.1007/s00239-004-2580-4
Estes Suzanne, Phillips Patrick C, Denver Dee R, Thomas W Kelley, Lynch Michael 2004. "Mutation accumulation in populations of varying size: the distribution of mutational effects for fitness correlates in Caenorhabditis elegans." Genetics 166 (3) doi:
Pfrender Michael E, Hicks Justin, Lynch Michael 2004. "Biogeographic patterns and current distribution of molecular-genetic variation among populations of speckled dace, Rhinichthys osculus (Girard)." Molecular phylogenetics and evolution 30 (3) doi:10.1016/S1055-7903(03)00242-2
Housworth Elizabeth A, Martins Emília P, Lynch Michael 2004. "The phylogenetic mixed model." The American naturalist 163 (1) doi:10.1086/380570
Cram David, Lynch Michael, O'Bryan Moira K, Salvado Chelsea, McLachlan Robert I, de Kretser David M 2004. "Genetic screening of infertile men." Reproduction, fertility, and development 16 (5) doi:10.10371/RD03097


Katju Vaishali, Lynch Michael 2003. "The structure and early evolution of recently arisen gene duplicates in the Caenorhabditis elegans genome." Genetics 165 (4) doi:
Lynch Michael 2003. "Consequences of children's exposure to community violence." Clinical child and family psychology review 6 (4) doi:
Lynch Michael, Conery John S 2003. "The origins of genome complexity." Science (New York, N.Y.) 302 (5649) doi:10.1126/science.1089370
Denver Dee R, Swenson Stephanie L, Lynch Michael 2003. "An evolutionary analysis of the helix-hairpin-helix superfamily of DNA repair glycosylases." Molecular biology and evolution 20 (10) doi:10.1093/molbev/msg177
Phelan Richard, Lynch Michael, Donegan John F, Weldon Vincent 2003. "Absorption line shift with temperature and pressure: impact on laser-diode-based H2O sensing at 1.393 microm." Applied optics 42 (24) doi:
Lynch Michael 2003. "God's signature: DNA profiling, the new gold standard in forensic science." Endeavour 27 (2) doi:
Estes Suzanne, Lynch Michael 2003. "Rapid fitness recovery in mutationally degraded lines of Caenorhabditis elegans." Evolution; international journal of organic evolution 57 (5) doi:
Baer Charles F, Lynch Michael 2003. "Correlated evolution of life-history with size at maturity in Daphnia pulicaria: patterns within and between populations." Genetical research 81 (2) doi:
Lynch Michael, Kewalramani Avinash 2003. "Messenger RNA surveillance and the evolutionary proliferation of introns." Molecular biology and evolution 20 (4) doi:10.1093/molbev/msg068
Keightley Peter D, Lynch Michael 2003. "Toward a realistic model of mutations affecting fitness." Evolution; international journal of organic evolution 57 (3) doi:
Lynch Michael, Conery John S 2003. "The evolutionary demography of duplicate genes." Journal of structural and functional genomics 3 (1-4) doi:


Lynch Michael, Richardson Aaron O 2002. "The evolution of spliceosomal introns." Current opinion in genetics & development 12 (6) doi:
Azevedo Ricardo B R, Keightley Peter D, Laurén-Määttä Camilla, Vassilieva Larissa L, Lynch Michael, Leroi Armand M 2002. "Spontaneous mutational variation for body size in Caenorhabditis elegans." Genetics 162 (2) doi:
McCowan Christina, Stanley Robin, Lynch Michael 2002. "Transitional cell carcinoma metastatic to the eye in a collared peccary (Tayassu tajacu)." Veterinary ophthalmology 5 (3) doi:
Lynch Michael, McCracken Helen, Slocombe Ronald 2002. "Hyperostotic bone disease in red pandas (Ailurus fulgens)." Journal of zoo and wildlife medicine : official publication of the American Association of Zoo Veterinarians 33 (3) doi:
Lynch Michael 2002. "Protocols, practices, and the reproduction of technique in molecular biology." The British journal of sociology 53 (2) doi:10.1080/00071310220133304
Lynch Michael 2002. "Intron evolution as a population-genetic process." Proceedings of the National Academy of Sciences of the United States of America 99 (9) doi:10.1073/pnas.092595699
Kotloski Robert, Lynch Michael, Lauersdorf Suzanne, Sutula Thomas 2002. "Repeated brief seizures induce progressive hippocampal neuron loss and memory deficits." Progress in brain research 135 doi:10.1016/S0079-6123(02)35010-6
Lynch Michael, Cicchetti Dante 2002. "Links between community violence and the family system: evidence from children's feelings of relatedness and perceptions of parent behavior." Family process 41 (3) doi: